PubReading [16] - Measuring cancer evolution from the genome - T. Graham and A. Sottoriva -

<p>The temporal dynamics of cancer evolution remain elusive, because it is impractical to longitudinally observe cancers unperturbed by treatment. Consequently, our knowledge of how cancers grow largely derives from inferences made from a single point in time – the endpoint in the<strong> cancer’s evolution</strong>, when it is removed from the body and studied in the laboratory. Fortuitously however, the cancer genome, by virtue of ongoing mutations that uniquely mark clonal lineages within the <strong>tumour</strong>, provides a rich, yet surreptitious, record of cancer development. In this review, we describe how a cancer’s genome can be analysed to reveal the temporal history of mutation and selection, and discuss why both selective and neutral evolution feature prominently in carcinogenesis. We argue that selection in cancer can only be properly studied once we have some understanding of what the absence of selection looks like. We review the data describing <strong>punctuated evolution</strong> in cancer, and reason that punctuated phenotype evolution is consistent with both <strong>gradual</strong> and punctuated genome evolution. We conclude that, to map and predict evolutionary trajectories during carcinogenesis, it is critical to better understand the relationship between <strong>genotype</strong> change and phenotype change.- DOI: 10.1002/path.4821 - 2016</p>